nf-claw — NOTICE

nf-claw was created by Danilo Monge (Eberhard Karls Universität Tübingen) and is released under the MIT License (see LICENSE).

THE PIPELINES ARE nf-core's WORK (the most important part)

The bioinformatics pipelines are the core of nf-claw, and they are authored by the nf-core community (https://nf-co.re) — NOT by nf-claw. They are included UNMODIFIED as pinned git submodules under pipelines/<name>/upstream/. Each pipeline keeps its own authors, license and citation; see that pipeline's own LICENSE and CITATIONS.md under pipelines/<name>/upstream/.

If you use a pipeline through nf-claw, please cite that specific pipeline, the nf-core framework, and Nextflow:

• nf-core: Ewels P.A. et al. The nf-core framework for community-curated bioinformatics pipelines. Nat Biotechnol 38, 276-278 (2020). https://doi.org/10.1038/s41587-020-0439-x
• Nextflow: Di Tommaso P. et al. Nextflow enables reproducible computational workflows. Nat Biotechnol 35, 316-319 (2017). https://doi.org/10.1038/nbt.3820

PORTIONS ADAPTED FROM ClawBio (MIT, Copyright (c) Manuel Corpas)

nf-claw adapts some files and its repository structure from ClawBio (https://clawbio.ai), created by Manuel Corpas and released under the MIT License. As required by MIT, ClawBio's copyright notice is retained in LICENSE. Provenance:

• runner/ generic pipeline runtime — consolidated and adapted from ClawBio's per-pipeline nf-core wrapper modules (command builder, executor, pipeline source, schema/params, samplesheet, preflight, outputs, provenance, errors).
• librarian/ library generation and git-based auto-update tooling — repurposed from ClawBio's scaffolding / catalog / lint scripts.
• LICENSE, CITATION.cff, and the agent/human docs (CLAUDE.md, AGENTS.md, README.md, CONTRIBUTING.md) were kept or rewritten from ClawBio.
• catalog.*, pipelines/<name>/skill.md and reference.md are generated deterministically from pinned schemas and source, with audited input contracts documented in runner/input_roles.json.

ClawBio: Corpas M. ClawBio: Bioinformatics-Native AI Agent Skill Library. Zenodo (2026). https://doi.org/10.5281/zenodo.19420648